Installing refgenie on Elzar
refgenie is a reference genome assembly asset manager that makes it easier to organize, retrieve, and share genome analysis resources.
Installation as your own user on Elzar can be achieved as follows (feel free to use a different version of Python based on your needs):
> module load EBModules
> module load Python/3.10.4-GCCcore-11.3.0
> pip install --user refgenie
> refgenie -h
version: 0.12.1 | refgenconf 0.12.2
usage: refgenie [-h] [--version] [--silent] [--verbosity V] [--logdev]
{init,list,listr,pull,build,seek,seekr,add,remove,getseq,tag,id,subscribe,unsubscribe,alias,compare,upgrade,populate,populater} ...
refgenie - reference genome asset managerRobert Petkus 5/22/23